HL_6N9E_213

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGGGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9E_213 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3127

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6N9E|1|1A|C|512
6N9E|1|1A|C|513
6N9E|1|1A|G|514
6N9E|1|1A|G|515
6N9E|1|1A|G|516
6N9E|1|1A|A|517
6N9E|1|1A|G|518
6N9E|1|1A|G|519

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S Ribosomal Protein L22