HL_6N9E_215
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCGACGAGG
- Length
- 9 nucleotides
- Bulged bases
- 6N9E|1|1a|C|470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N9E_215 not in the Motif Atlas
- Geometric match to HL_5UD5_002
- Geometric discrepancy: 0.3481
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_87306.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6N9E|1|1a|C|457
6N9E|1|1a|C|458
6N9E|1|1a|G|460
6N9E|1|1a|A|461
6N9E|1|1a|C|470
6N9E|1|1a|G|471
6N9E|1|1a|A|472
6N9E|1|1a|G|473
6N9E|1|1a|G|474
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
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