HL_6N9F_104
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6N9F|1|1x|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N9F_104 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.086
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6N9F|1|1x|G|31
6N9F|1|1x|5MC|32
6N9F|1|1x|U|33
6N9F|1|1x|C|34
6N9F|1|1x|A|35
6N9F|1|1x|U|36
6N9F|1|1x|A|37
6N9F|1|1x|A|38
6N9F|1|1x|C|39
Current chains
- Chain 1x
- P-site tRNA, Deacylated Initiator Methionyl-tRNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1i
- 30S ribosomal protein S9
- Chain 1m
- 30S ribosomal protein S13
- Chain 1v
- mRNA
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