HL_6N9F_139

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6N9F|1|2A|G|1325, 6N9F|1|2A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_139 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1203

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6N9F|1|2A|G|1324
6N9F|1|2A|G|1325
6N9F|1|2A|U|1326
6N9F|1|2A|C|1327
6N9F|1|2A|G|1328
6N9F|1|2A|U|1329
6N9F|1|2A|C|1330

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S Ribosomal Protein L17

Chain 2W

50S Ribosomal Protein L22