HL_6N9F_191

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6N9F|1|2a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N9F_191 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1236

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6N9F|1|2a|G|617
6N9F|1|2a|C|618
6N9F|1|2a|U|619
6N9F|1|2a|C|620
6N9F|1|2a|A|621
6N9F|1|2a|A|622
6N9F|1|2a|C|623

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S Ribosomal Protein S4

Chain 2p

30S ribosomal protein S16