HL_6ND5_026
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAACG
- Length
- 8 nucleotides
- Bulged bases
- 6ND5|1|1A|U|958, 6ND5|1|1A|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ND5_026 not in the Motif Atlas
- Homologous match to HL_7RQB_027
- Geometric discrepancy: 0.0561
- The information below is about HL_7RQB_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
6ND5|1|1A|C|955
6ND5|1|1A|G|956
6ND5|1|1A|A|957
6ND5|1|1A|U|958
6ND5|1|1A|A|959
6ND5|1|1A|A|960
6ND5|1|1A|C|961
6ND5|1|1A|G|962
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
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