HL_6ND5_030

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

6ND5|1|1A|U|1175, 6ND5|1|1A|G|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_030 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.3728

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

6ND5|1|1A|G|1171
6ND5|1|1A|G|1173
6ND5|1|1A|A|1174
6ND5|1|1A|U|1175
6ND5|1|1A|G|1176
6ND5|1|1A|A|1177
6ND5|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains