HL_6ND5_032
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ND5_032 not in the Motif Atlas
- Homologous match to HL_7RQB_033
- Geometric discrepancy: 0.045
- The information below is about HL_7RQB_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41998.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 69
Unit IDs
6ND5|1|1A|G|1281
6ND5|1|1A|U|1282
6ND5|1|1A|G|1283
6ND5|1|1A|A|1284
6ND5|1|1A|G|1285
6ND5|1|1A|A|1286
6ND5|1|1A|A|1287
6ND5|1|1A|U|1288
6ND5|1|1A|C|1289
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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