HL_6ND5_042

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

6ND5|1|1A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.1835

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

6ND5|1|1A|U|1720
6ND5|1|1A|G|1721
6ND5|1|1A|A|1722
6ND5|1|1A|U|1739
6ND5|1|1A|G|1740
6ND5|1|1A|A|1741
6ND5|1|1A|G|1742

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains