HL_6ND5_061

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_061 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.097

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ND5|1|1A|C|2551
6ND5|1|1A|2MU|2552
6ND5|1|1A|G|2553
6ND5|1|1A|U|2554
6ND5|1|1A|U|2555
6ND5|1|1A|C|2556
6ND5|1|1A|G|2557

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1w

Transfer RNA; tRNA