HL_6ND5_064

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_064 not in the Motif Atlas

Homologous match to HL_7RQB_065

Geometric discrepancy: 0.0516

The information below is about HL_7RQB_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53171.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

18

Unit IDs

6ND5|1|1A|C|2701
6ND5|1|1A|U|2702
6ND5|1|1A|C|2703
6ND5|1|1A|C|2704
6ND5|1|1A|A|2705
6ND5|1|1A|G|2706

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17