HL_6ND5_083

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_083 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2667

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6ND5|1|1a|G|521
6ND5|1|1a|C|522
6ND5|1|1a|A|523
6ND5|1|1a|G|524
6ND5|1|1a|C|525
6ND5|1|1a|C|526
6ND5|1|1a|7MG|527
6ND5|1|1a|C|528

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12

Chain 1v

mRNA