HL_6ND5_164

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6ND5|1|2A|A|2268, 6ND5|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND5_164 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.053

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6ND5|1|2A|C|2264
6ND5|1|2A|U|2265
6ND5|1|2A|A|2266
6ND5|1|2A|A|2267
6ND5|1|2A|A|2268
6ND5|1|2A|A|2269
6ND5|1|2A|G|2270
6ND5|1|2A|G|2271
6ND5|1|2A|U|2272
6ND5|1|2A|A|2273
6ND5|1|2A|A|2274
6ND5|1|2A|C|2275
6ND5|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16