HL_6ND6_084

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6ND6|1|1a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND6_084 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1651

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6ND6|1|1a|G|617
6ND6|1|1a|C|618
6ND6|1|1a|U|619
6ND6|1|1a|C|620
6ND6|1|1a|A|621
6ND6|1|1a|A|622
6ND6|1|1a|C|623

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1p

30S ribosomal protein S16