HL_6ND6_154

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GUGAUGAGC

Length

9 nucleotides

Bulged bases

6ND6|1|2A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND6_154 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2943

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ND6|1|2A|G|1719
6ND6|1|2A|U|1720
6ND6|1|2A|G|1721
6ND6|1|2A|A|1722
6ND6|1|2A|U|1739
6ND6|1|2A|G|1740
6ND6|1|2A|A|1741
6ND6|1|2A|G|1742
6ND6|1|2A|C|1743

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains