HL_6ND6_172

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

6ND6|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ND6_172 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.334

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6ND6|1|2A|C|2527
6ND6|1|2A|U|2528
6ND6|1|2A|G|2529
6ND6|1|2A|A|2530
6ND6|1|2A|A|2531
6ND6|1|2A|G|2532
6ND6|1|2A|A|2533
6ND6|1|2A|A|2534
6ND6|1|2A|G|2535
6ND6|1|2A|G|2536

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6