HL_6NDK_018

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

6NDK|1|QA|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.2389

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6NDK|1|QA|G|838
6NDK|1|QA|U|839
6NDK|1|QA|C|840
6NDK|1|QA|U|841
6NDK|1|QA|C|848

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2