HL_6NDK_045

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6NDK|1|RA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_045 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1497

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6NDK|1|RA|U|305
6NDK|1|RA|U|306
6NDK|1|RA|G|307
6NDK|1|RA|G|308
6NDK|1|RA|G|309
6NDK|1|RA|A|310
6NDK|1|RA|A|311
6NDK|1|RA|G|312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24