HL_6NDK_065

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6NDK|1|RA|G|1068, 6NDK|1|RA|A|1070, 6NDK|1|RA|G|1071, 6NDK|1|RA|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_065 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2148

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6NDK|1|RA|C|1064
6NDK|1|RA|U|1065
6NDK|1|RA|U|1066
6NDK|1|RA|A|1067
6NDK|1|RA|G|1068
6NDK|1|RA|A|1069
6NDK|1|RA|A|1070
6NDK|1|RA|G|1071
6NDK|1|RA|C|1072
6NDK|1|RA|A|1073
6NDK|1|RA|G|1074

Current chains

Chain RA

23S rRNA

Nearby chains