HL_6NDK_091

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6NDK|1|RA|A|2268, 6NDK|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_091 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.115

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6NDK|1|RA|C|2264
6NDK|1|RA|U|2265
6NDK|1|RA|A|2266
6NDK|1|RA|A|2267
6NDK|1|RA|A|2268
6NDK|1|RA|A|2269
6NDK|1|RA|G|2270
6NDK|1|RA|G|2271
6NDK|1|RA|U|2272
6NDK|1|RA|A|2273
6NDK|1|RA|A|2274
6NDK|1|RA|C|2275
6NDK|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16