HL_6NDK_094

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_094 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.1425

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6NDK|1|RA|C|2355
6NDK|1|RA|C|2356
6NDK|1|RA|U|2357
6NDK|1|RA|G|2358
6NDK|1|RA|C|2359
6NDK|1|RA|A|2360
6NDK|1|RA|A|2361
6NDK|1|RA|G|2362

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15