HL_6NDK_129
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6NDK|1|XA|A|968, 6NDK|1|XA|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6NDK_129 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.2387
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6NDK|1|XA|G|963
6NDK|1|XA|A|964
6NDK|1|XA|A|965
6NDK|1|XA|M2G|966
6NDK|1|XA|5MC|967
6NDK|1|XA|A|968
6NDK|1|XA|A|969
6NDK|1|XA|C|970
6NDK|1|XA|G|971
6NDK|1|XA|C|972
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XI
- 30S ribosomal protein S9
- Chain XJ
- 30S ribosomal protein S10
- Chain XM
- 30S ribosomal protein S13
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- A-site ASLSufA6 A37.5
Coloring options: