3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GUUCAAAUCC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6NDK_143 not in the Motif Atlas
Homologous match to HL_7OSM_117
Geometric discrepancy: 0.3947
The information below is about HL_7OSM_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6NDK|1|XV|G|53
6NDK|1|XV|U|54
6NDK|1|XV|U|55
6NDK|1|XV|C|56
6NDK|1|XV|A|57
6NDK|1|XV|A|58
6NDK|1|XV|A|59
6NDK|1|XV|U|60
6NDK|1|XV|C|61
6NDK|1|XV|C|62

Current chains

Chain XV
P-site tRNAfMet

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YG
50S ribosomal protein L5
Chain YQ
50S ribosomal protein L16

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