HL_6NDK_153

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6NDK|1|YA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_153 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.1374

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6NDK|1|YA|U|305
6NDK|1|YA|U|306
6NDK|1|YA|G|307
6NDK|1|YA|G|308
6NDK|1|YA|G|309
6NDK|1|YA|A|310
6NDK|1|YA|A|311
6NDK|1|YA|G|312

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YY

50S ribosomal protein L24