HL_6NDK_218

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

6NDK|1|QV|C|16, 6NDK|1|QV|C|17, 6NDK|1|QV|U|17|||A, 6NDK|1|QV|G|18, 6NDK|1|QV|G|19, 6NDK|1|QV|U|20, 6NDK|1|QV|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_218 not in the Motif Atlas

Homologous match to HL_4WT8_234

Geometric discrepancy: 0.3441

The information below is about HL_4WT8_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6NDK|1|QV|G|12
6NDK|1|QV|C|13
6NDK|1|QV|A|14
6NDK|1|QV|G|15
6NDK|1|QV|C|16
6NDK|1|QV|C|17
6NDK|1|QV|U|17|||A
6NDK|1|QV|G|18
6NDK|1|QV|G|19
6NDK|1|QV|U|20
6NDK|1|QV|A|21
6NDK|1|QV|G|22
6NDK|1|QV|C|23

Current chains

Chain QV

P-site tRNAfMet

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RG

50S ribosomal protein L5