HL_6NDK_219
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GGUUCAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6NDK_219 not in the Motif Atlas
- Homologous match to HL_4TUE_218
- Geometric discrepancy: 0.1807
- The information below is about HL_4TUE_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6NDK|1|QV|G|52
6NDK|1|QV|G|53
6NDK|1|QV|U|54
6NDK|1|QV|U|55
6NDK|1|QV|C|56
6NDK|1|QV|A|57
6NDK|1|QV|A|58
6NDK|1|QV|A|59
6NDK|1|QV|U|60
6NDK|1|QV|C|61
6NDK|1|QV|C|62
Current chains
- Chain QV
- P-site tRNAfMet
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RG
- 50S ribosomal protein L5
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
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