HL_6NDK_233

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_233 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2088

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6NDK|1|RA|G|2304
6NDK|1|RA|A|2305
6NDK|1|RA|C|2306
6NDK|1|RA|G|2307
6NDK|1|RA|G|2308
6NDK|1|RA|A|2309
6NDK|1|RA|A|2310
6NDK|1|RA|A|2311
6NDK|1|RA|U|2312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5