3D structure

PDB id
6NQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCGCAAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6NQB_032 not in the Motif Atlas
Geometric match to HL_2IL9_007
Geometric discrepancy: 0.2454
The information below is about HL_2IL9_007
Detailed Annotation
GNRA with extra near cWW
Broad Annotation
GNRA with extra near cWW
Motif group
HL_82182.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
21

Unit IDs

6NQB|1|A|C|896
6NQB|1|A|C|897
6NQB|1|A|G|898
6NQB|1|A|C|899
6NQB|1|A|A|900
6NQB|1|A|A|901
6NQB|1|A|G|902
6NQB|1|A|G|903

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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