HL_6NSH_150

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6NSH|1|YA|G|329, 6NSH|1|YA|A|330, 6NSH|1|YA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NSH_150 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1008

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6NSH|1|YA|G|327
6NSH|1|YA|U|328
6NSH|1|YA|G|329
6NSH|1|YA|A|330
6NSH|1|YA|A|331
6NSH|1|YA|A|332
6NSH|1|YA|G|333
6NSH|1|YA|C|334
6NSH|1|YA|C|335

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24