HL_6NSH_168

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6NSH|1|YA|A|1095, 6NSH|1|YA|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NSH_168 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.585

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6NSH|1|YA|C|1092
6NSH|1|YA|G|1093
6NSH|1|YA|U|1094
6NSH|1|YA|A|1095
6NSH|1|YA|A|1096
6NSH|1|YA|U|1097
6NSH|1|YA|A|1098
6NSH|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6