HL_6NTA_060

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6NTA|1|RA|U|958, 6NTA|1|RA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_060 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1092

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6NTA|1|RA|C|955
6NTA|1|RA|G|956
6NTA|1|RA|A|957
6NTA|1|RA|U|958
6NTA|1|RA|A|959
6NTA|1|RA|A|960
6NTA|1|RA|C|961
6NTA|1|RA|G|962

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RQ

50S ribosomal protein L16