HL_6NTA_062

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

6NTA|1|RA|A|1067, 6NTA|1|RA|G|1068, 6NTA|1|RA|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_062 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3274

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6NTA|1|RA|U|1065
6NTA|1|RA|U|1066
6NTA|1|RA|A|1067
6NTA|1|RA|G|1068
6NTA|1|RA|A|1069
6NTA|1|RA|A|1070
6NTA|1|RA|G|1071
6NTA|1|RA|C|1072
6NTA|1|RA|A|1073

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16