HL_6NTA_082

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6NTA|1|RA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_082 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1386

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NTA|1|RA|G|1910
6NTA|1|RA|U|1911
6NTA|1|RA|A|1912
6NTA|1|RA|A|1913
6NTA|1|RA|C|1914
6NTA|1|RA|U|1915
6NTA|1|RA|A|1916
6NTA|1|RA|U|1917
6NTA|1|RA|A|1918
6NTA|1|RA|A|1919
6NTA|1|RA|C|1920

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA