HL_6NTA_109

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

6NTA|1|XA|U|189, 6NTA|1|XA|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_109 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3303

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6NTA|1|XA|C|186|||F
6NTA|1|XA|C|187
6NTA|1|XA|U|188
6NTA|1|XA|U|189
6NTA|1|XA|G|190
6NTA|1|XA|G|191|||A
6NTA|1|XA|G|191|||B

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20