HL_6NTA_126

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

6NTA|1|XA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_126 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1909

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NTA|1|XA|G|963
6NTA|1|XA|A|964
6NTA|1|XA|A|965
6NTA|1|XA|G|966
6NTA|1|XA|C|967
6NTA|1|XA|A|968
6NTA|1|XA|A|969
6NTA|1|XA|C|970
6NTA|1|XA|G|971
6NTA|1|XA|C|972

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XM

30S ribosomal protein S13

Chain XN

30S ribosomal protein S14 type Z

Chain XV

P-site ASLPro