HL_6NTA_148

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6NTA|1|YA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_148 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1178

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

6NTA|1|YA|U|305
6NTA|1|YA|U|306
6NTA|1|YA|G|307
6NTA|1|YA|G|308
6NTA|1|YA|G|309
6NTA|1|YA|A|310
6NTA|1|YA|A|311
6NTA|1|YA|G|312

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YY

50S ribosomal protein L24