HL_6NTA_150

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6NTA|1|YA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_150 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1013

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6NTA|1|YA|G|327
6NTA|1|YA|U|328
6NTA|1|YA|G|329
6NTA|1|YA|A|330
6NTA|1|YA|A|331
6NTA|1|YA|A|332
6NTA|1|YA|G|333
6NTA|1|YA|C|334
6NTA|1|YA|C|335

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24