HL_6NTA_165

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6NTA|1|YA|C|885, 6NTA|1|YA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_165 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3552

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6NTA|1|YA|C|884
6NTA|1|YA|C|885
6NTA|1|YA|C|886
6NTA|1|YA|A|887
6NTA|1|YA|C|888
6NTA|1|YA|C|889
6NTA|1|YA|A|890
6NTA|1|YA|G|892

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13