HL_6NTA_193

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6NTA|1|YA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_193 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.079

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6NTA|1|YA|C|2248
6NTA|1|YA|U|2249
6NTA|1|YA|G|2250
6NTA|1|YA|G|2251
6NTA|1|YA|G|2252
6NTA|1|YA|G|2253
6NTA|1|YA|C|2254
6NTA|1|YA|G|2255
6NTA|1|YA|G|2256

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16