HL_6NUO_033

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGG(1MG)AC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NUO_033 not in the Motif Atlas

Homologous match to HL_6UGG_005

Geometric discrepancy: 0.1879

The information below is about HL_6UGG_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_83632.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6NUO|1|QV|G|31
6NUO|1|QV|U|32
6NUO|1|QV|U|33
6NUO|1|QV|C|34
6NUO|1|QV|G|35
6NUO|1|QV|G|36
6NUO|1|QV|1MG|37
6NUO|1|QV|A|38
6NUO|1|QV|C|39

Current chains

Chain QV

P-site tRNA-Pro

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QI

30S ribosomal protein S9

Chain QX

mRNA