6NUO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6NUO_001 | 1/QA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6NUO_003 | 1/QA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6NUO_004 | 1/QA/186G:191A | No text annotation | homologous HL_6CZR_075 NA | |
| HL_6NUO_005 | 1/QA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_6NUO_006 | 1/QA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6NUO_007 | 1/QA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6NUO_008 | 1/QA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6NUO_009 | 1/QA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6NUO_010 | 1/QA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6NUO_011 | 1/QA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6NUO_012 | 1/QA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6NUO_013 | 1/QA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6NUO_014 | 1/QA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6NUO_015 | 1/QA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_6NUO_016 | 1/QA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6NUO_017 | 1/QA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6NUO_215 | 1/QA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6NUO_019 | 1/QA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6NUO_020 | 1/QA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6NUO_021 | 1/QA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6NUO_022 | 1/QA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6NUO_023 | 1/QA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6NUO_024 | 1/QA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_6NUO_025 | 1/QA/1134:1140 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6NUO_026 | 1/QA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6NUO_027 | 1/QA/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_6NUO_028 | 1/QA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6NUO_029 | 1/QA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6NUO_030 | 1/QA/1449:1454 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_6NUO_031 | 1/QA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_6NUO_032 | 1/QV/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_6NUO_033 | 1/QV/31:39 | tRNA anticodon loop | homologous HL_6UGG_005 HL_83632.1 | |
| HL_6NUO_034 | 1/QV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.8 | |
| HL_6NUO_035 | 1/RA/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6NUO_036 | 1/RA/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6NUO_037 | 1/RA/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6NUO_038 | 1/RA/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6NUO_040 | 1/RA/183:190 | No text annotation | geometric HL_7A0S_006 HL_30068.2 | |
| HL_6NUO_041 | 1/RA/214:219 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6NUO_042 | 1/RA/235:241 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6NUO_043 | 1/RA/270:273 | No text annotation | ||
| HL_6NUO_044 | 1/RA/329:336 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_6NUO_045 | 1/RA/343:347 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6NUO_046 | 1/RA/351:359 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6NUO_217 | 1/RA/410:418 | No text annotation | ||
| HL_6NUO_048 | 1/RA/437:444 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6NUO_049 | 1/RA/488:493 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6NUO_050 | 1/RA/513:518 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_6NUO_051 | 1/RA/568:573 | GNRA | geometric HL_5J7L_004 HL_37824.7 | |
| HL_6NUO_052 | 1/RA/589:598 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_6NUO_053 | 1/RA/635:641 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_6NUO_054 | 1/RA/654:659 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_6NUO_055 | 1/RA/666:672 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6NUO_056 | 1/RA/759:766 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6NUO_057 | 1/RA/791:800 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6NUO_058 | 1/RA/826:832 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6NUO_059 | 1/RA/873:878 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6NUO_225 | 1/RA/931:938 | No text annotation | ||
| HL_6NUO_061 | 1/RA/1000:1007 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6NUO_062 | 1/RA/1024:1031 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6NUO_226 | 1/RA/1111:1119 | No text annotation | ||
| HL_6NUO_218 | 1/RA/1137:1146 | No text annotation | ||
| HL_6NUO_064 | 1/RA/1138:1145 | No text annotation | ||
| HL_6NUO_065 | 1/RA/1216:1224 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6NUO_066 | 1/RA/1268:1273 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6NUO_067 | 1/RA/1327:1335 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6NUO_068 | 1/RA/1370:1376 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_6NUO_069 | 1/RA/1409:1414 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6NUO_070 | 1/RA/1435:1444 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6NUO_071 | 1/RA/1499:1506 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6NUO_072 | 1/RA/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6NUO_073 | 1/RA/1579:1584 | No text annotation | ||
| HL_6NUO_074 | 1/RA/1612:1615 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6NUO_075 | 1/RA/1658:1665 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6NUO_076 | 1/RA/1677:1682 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6NUO_077 | 1/RA/1738:1743 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6NUO_078 | 1/RA/1765:1771 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6NUO_079 | 1/RA/1783:1787 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6NUO_080 | 1/RA/1808:1818 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6NUO_081 | 1/RA/1837:1842 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6NUO_082 | 1/RA/1895:1900 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6NUO_083 | 1/RA/1932:1942 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6NUO_084 | 1/RA/1971:1979 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6NUO_085 | 1/RA/2049:2058 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6NUO_086 | 1/RA/2165:2170 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6NUO_087 | 1/RA/2226:2231 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6NUO_088 | 1/RA/2260:2268 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6NUO_089 | 1/RA/2276:2288 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6NUO_090 | 1/RA/2315:2325 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_6NUO_091 | 1/RA/2336:2343 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6NUO_092 | 1/RA/2367:2374 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6NUO_093 | 1/RA/2386:2391 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6NUO_094 | 1/RA/2416:2425 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6NUO_095 | 1/RA/2483:2491 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6NUO_096 | 1/RA/2540:2547 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6NUO_097 | 1/RA/2563:2569 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6NUO_098 | 1/RA/2606:2611 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6NUO_099 | 1/RA/2670:2675 | GNRA | geometric HL_4V9F_066 HL_37824.7 | |
| HL_6NUO_100 | 1/RA/2713:2718 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6NUO_101 | 1/RA/2758:2772 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6NUO_102 | 1/RA/2807:2813 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_6NUO_103 | 1/RA/2829:2837 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6NUO_104 | 1/RA/2866:2871 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6NUO_105 | 1/RB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6NUO_106 | 1/RB/86:90 | GNRA | homologous HL_7RQB_071 NA | |
| HL_6NUO_107 | 1/XA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6NUO_109 | 1/XA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6NUO_110 | 1/XA/186G:191A | No text annotation | homologous HL_6CZR_075 NA | |
| HL_6NUO_227 | 1/XA/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_6NUO_112 | 1/XA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6NUO_113 | 1/XA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6NUO_114 | 1/XA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6NUO_115 | 1/XA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6NUO_116 | 1/XA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_6NUO_117 | 1/XA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6NUO_118 | 1/XA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6NUO_119 | 1/XA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6NUO_120 | 1/XA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6NUO_121 | 1/XA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6NUO_122 | 1/XA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6NUO_123 | 1/XA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6NUO_124 | 1/XA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_6NUO_125 | 1/XA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6NUO_126 | 1/XA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6NUO_127 | 1/XA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6NUO_128 | 1/XA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6NUO_129 | 1/XA/1028C:1032C | No text annotation | ||
| HL_6NUO_130 | 1/XA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6NUO_131 | 1/XA/1089:1096 | T-loop related | homologous HL_6CZR_096 NA | |
| HL_6NUO_132 | 1/XA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6NUO_133 | 1/XA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6NUO_134 | 1/XA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_6NUO_135 | 1/XA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6NUO_136 | 1/XA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6NUO_137 | 1/XA/1449:1454 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_6NUO_138 | 1/XA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6NUO_139 | 1/XV/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_6NUO_140 | 1/XV/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.6 | |
| HL_6NUO_141 | 1/XV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WT1_003 HL_28252.8 | |
| HL_6NUO_142 | 1/YA/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6NUO_143 | 1/YA/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6NUO_144 | 1/YA/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6NUO_145 | 1/YA/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6NUO_147 | 1/YA/183:190 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_6NUO_148 | 1/YA/214:219 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6NUO_149 | 1/YA/235:241 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6NUO_222 | 1/YA/269:275 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_6NUO_150 | 1/YA/270:273 | No text annotation | ||
| HL_6NUO_151 | 1/YA/329:336 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6NUO_152 | 1/YA/343:347 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6NUO_153 | 1/YA/351:359 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6NUO_228 | 1/YA/410:418 | No text annotation | ||
| HL_6NUO_155 | 1/YA/437:444 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6NUO_156 | 1/YA/488:493 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6NUO_157 | 1/YA/513:518 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6NUO_158 | 1/YA/568:573 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6NUO_159 | 1/YA/589:598 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_6NUO_160 | 1/YA/635:641 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_6NUO_161 | 1/YA/654:659 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6NUO_162 | 1/YA/666:672 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6NUO_164 | 1/YA/759:766 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6NUO_165 | 1/YA/791:800 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6NUO_166 | 1/YA/826:832 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6NUO_167 | 1/YA/873:878 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6NUO_168 | 1/YA/931:938 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_6NUO_169 | 1/YA/1000:1007 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6NUO_170 | 1/YA/1024:1031 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6NUO_171 | 1/YA/1109:1121 | No text annotation | homologous HL_7RQB_029 NA | |
| HL_6NUO_172 | 1/YA/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_6NUO_173 | 1/YA/1217:1223 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_6NUO_174 | 1/YA/1268:1273 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6NUO_175 | 1/YA/1327:1335 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6NUO_176 | 1/YA/1370:1376 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_6NUO_177 | 1/YA/1409:1414 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6NUO_178 | 1/YA/1435:1444 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6NUO_179 | 1/YA/1499:1506 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_6NUO_180 | 1/YA/1538:1544 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6NUO_181 | 1/YA/1579:1584 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6NUO_182 | 1/YA/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_6NUO_183 | 1/YA/1658:1665 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6NUO_184 | 1/YA/1677:1682 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6NUO_185 | 1/YA/1738:1743 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6NUO_186 | 1/YA/1765:1771 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6NUO_187 | 1/YA/1783:1787 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6NUO_188 | 1/YA/1808:1818 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6NUO_189 | 1/YA/1837:1842 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6NUO_190 | 1/YA/1895:1900 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6NUO_191 | 1/YA/1932:1942 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6NUO_192 | 1/YA/1971:1979 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6NUO_193 | 1/YA/2049:2058 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6NUO_194 | 1/YA/2165:2170 | UNCG | homologous HL_3U4M_001 HL_34617.5 | |
| HL_6NUO_195 | 1/YA/2226:2231 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6NUO_196 | 1/YA/2260:2268 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_6NUO_197 | 1/YA/2276:2288 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6NUO_223 | 1/YA/2316:2324 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6NUO_199 | 1/YA/2336:2343 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6NUO_200 | 1/YA/2367:2374 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6NUO_201 | 1/YA/2386:2391 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6NUO_202 | 1/YA/2416:2425 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6NUO_203 | 1/YA/2483:2491 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_6NUO_204 | 1/YA/2540:2547 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6NUO_205 | 1/YA/2563:2569 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6NUO_206 | 1/YA/2606:2611 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6NUO_207 | 1/YA/2670:2675 | GNRA | geometric HL_7RQB_064 NA | |
| HL_6NUO_208 | 1/YA/2713:2718 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6NUO_209 | 1/YA/2758:2772 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6NUO_210 | 1/YA/2807:2813 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6NUO_211 | 1/YA/2829:2837 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6NUO_212 | 1/YA/2866:2871 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6NUO_224 | 1/YB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_6NUO_213 | 1/YB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_6NUO_214 | 1/YB/86:91 | No text annotation | geometric HL_5TBW_006 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6NUO_002 | Externally structured | ||
| HL_6NUO_018 | No text annotation | ||
| HL_6NUO_216 | No text annotation | ||
| HL_6NUO_039 | No text annotation | ||
| HL_6NUO_047 | No text annotation | ||
| HL_6NUO_060 | No text annotation | ||
| HL_6NUO_063 | No text annotation | ||
| HL_6NUO_108 | No text annotation | ||
| HL_6NUO_219 | No text annotation | ||
| HL_6NUO_111 | No text annotation | ||
| HL_6NUO_220 | No text annotation | ||
| HL_6NUO_221 | No text annotation | ||
| HL_6NUO_146 | No text annotation | ||
| HL_6NUO_154 | No text annotation | ||
| HL_6NUO_163 | No text annotation | ||
| HL_6NUO_198 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6NUO_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6NUO_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6NUO_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_6NUO_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6NUO_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6NUO_006 | 1/QA/67:69, 1/QA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6NUO_007 | 1/QA/129A:131, 1/QA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_6NUO_008 | 1/QA/132:136, 1/QA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6NUO_009 | 1/QA/148:153, 1/QA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6NUO_010 | 1/QA/186A:186C, 1/QA/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6NUO_011 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6NUO_012 | 1/QA/249:252, 1/QA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6NUO_013 | 1/QA/292:293, 1/QA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6NUO_014 | 1/QA/367:369, 1/QA/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6NUO_015 | 1/QA/371:375, 1/QA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_6NUO_016 | 1/QA/375:376, 1/QA/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6NUO_017 | 1/QA/409:416, 1/QA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6NUO_018 | 1/QA/446:450, 1/QA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_6NUO_019 | 1/QA/450:455, 1/QA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6NUO_020 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6NUO_021 | 1/QA/515:521, 1/QA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6NUO_022 | 1/QA/569:575, 1/QA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6NUO_023 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_6NUO_024 | 1/QA/594:596, 1/QA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6NUO_025 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6NUO_026 | 1/QA/605:612, 1/QA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6NUO_027 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_6NUO_028 | 1/QA/657:658, 1/QA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6NUO_029 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6NUO_357 | 1/QA/673:677, 1/QA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6NUO_031 | 1/QA/683:688, 1/QA/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_6NUO_032 | 1/QA/774:778, 1/QA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6NUO_033 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_6NUO_034 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6NUO_035 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6NUO_036 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6NUO_037 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_6NUO_038 | 1/QA/953:954, 1/QA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_6NUO_039 | 1/QA/1003:1006, 1/QA/1023:1037 | No text annotation | ||
| IL_6NUO_040 | 1/QA/1048:1050, 1/QA/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
| IL_6NUO_041 | 1/QA/1052:1056, 1/QA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6NUO_042 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6NUO_043 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6NUO_044 | 1/QA/1061:1063, 1/QA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6NUO_380 | 1/QA/1124:1133, 1/QA/1141:1149 | No text annotation | ||
| IL_6NUO_046 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6NUO_047 | 1/QA/1255:1258, 1/QA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6NUO_048 | 1/QA/1259:1260, 1/QA/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6NUO_049 | 1/QA/1260:1262, 1/QA/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_6NUO_050 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_6NUO_051 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_6NUO_052 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6NUO_053 | 1/QA/1405:1407, 1/QA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_87907.2 | |
| IL_6NUO_054 | 1/QA/1407:1409, 1/QA/1491:1494 | No text annotation | geometric IL_8UO6_002 IL_31737.3 | |
| IL_6NUO_055 | 1/QA/1412:1414, 1/QA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6NUO_056 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6NUO_057 | 1/QA/1431:1435, 1/QA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_6NUO_058 | 1/QA/1435:1437, 1/QA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_6NUO_059 | 1/QA/1440:1447, 1/QA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_6NUO_060 | 1/RA/24:30, 1/RA/535:541 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6NUO_061 | 1/RA/36:37, 1/RA/468:470 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6NUO_062 | 1/RA/42:43, 1/RA/461:463 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_6NUO_063 | 1/RA/80:84, 1/RA/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6NUO_064 | 1/RA/172:173, 1/RA/201:203 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6NUO_065 | 1/RA/177:183, 1/RA/190:197 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6NUO_066 | 1/RA/228:234, 1/RA/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6NUO_359 | 1/RA/269:270, 1/RA/273:275 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6NUO_068 | 1/RA/291:292, 1/RA/392:394 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6NUO_360 | 1/RA/297:302, 1/RA/386:387 | No text annotation | ||
| IL_6NUO_070 | 1/RA/304:308, 1/RA/381:384 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6NUO_071 | 1/RA/312:314, 1/RA/374:377 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6NUO_072 | 1/RA/317:319, 1/RA/367:371 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6NUO_073 | 1/RA/507:510, 1/RA/521:534 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6NUO_074 | 1/RA/587:589, 1/RA/598:600 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_6NUO_075 | 1/RA/629:633, 1/RA/643:647 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_6NUO_076 | 1/RA/719:721, 1/RA/853:855 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6NUO_077 | 1/RA/721:725, 1/RA/846:853 | tHW-tHW cross-strand stack | geometric IL_7A0S_015 IL_54041.2 | |
| IL_6NUO_078 | 1/RA/744:745, 1/RA/810:812 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6NUO_079 | 1/RA/749:750, 1/RA/775:777 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_6NUO_080 | 1/RA/750:754, 1/RA/771:775 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6NUO_081 | 1/RA/785:788, 1/RA/803:805 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6NUO_082 | 1/RA/822:824, 1/RA/834:838 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6NUO_083 | 1/RA/884:885, 1/RA/985:987 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6NUO_084 | 1/RA/891:893, 1/RA/976:979 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6NUO_361 | 1/RA/891:897, 1/RA/973:979 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6NUO_085 | 1/RA/893:897, 1/RA/973:976 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6NUO_362 | 1/RA/905:909, 1/RA/961:965 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_6NUO_087 | 1/RA/909:910, 1/RA/959:961 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6NUO_088 | 1/RA/911:915, 1/RA/955:958 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6NUO_089 | 1/RA/922:924, 1/RA/945:948 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_6NUO_381 | 1/RA/922:926, 1/RA/944:948 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6NUO_090 | 1/RA/924:926, 1/RA/944:945 | Minor groove platform | geometric IL_7RQB_032 NA | |
| IL_6NUO_091 | 1/RA/927:928, 1/RA/941:943 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_6NUO_092 | 1/RA/997:999, 1/RA/1008:1010 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6NUO_093 | 1/RA/1040:1042, 1/RA/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6NUO_094 | 1/RA/1044:1048, 1/RA/1199:1203 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6NUO_095 | 1/RA/1050:1057, 1/RA/1196:1197 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_6NUO_096 | 1/RA/1057:1059, 1/RA/1195:1196 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_6NUO_097 | 1/RA/1064:1070, 1/RA/1185:1190 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6NUO_098 | 1/RA/1070:1076, 1/RA/1170:1185 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6NUO_099 | 1/RA/1077:1080, 1/RA/1167:1169 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_6NUO_100 | 1/RA/1089:1097, 1/RA/1154:1158 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6NUO_102 | 1/RA/1133:1137, 1/RA/1146:1148 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_6NUO_103 | 1/RA/1241:1243, 1/RA/1293:1296 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_6NUO_104 | 1/RA/1247:1251, 1/RA/1286:1289 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6NUO_105 | 1/RA/1253:1260, 1/RA/1280:1284 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6NUO_106 | 1/RA/1264:1266, 1/RA/1275:1276 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6NUO_107 | 1/RA/1308:1315, 1/RA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6NUO_108 | 1/RA/1356:1359, 1/RA/1649:1650 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6NUO_109 | 1/RA/1365:1369, 1/RA/1377:1379 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6NUO_110 | 1/RA/1397:1401, 1/RA/1422:1426 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6NUO_111 | 1/RA/1403:1407, 1/RA/1416:1420 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6NUO_112 | 1/RA/1461:1462, 1/RA/1629:1633 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6NUO_113 | 1/RA/1463:1467, 1/RA/1624:1628 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6NUO_114 | 1/RA/1479:1481, 1/RA/1604:1607 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6NUO_115 | 1/RA/1483:1486, 1/RA/1598:1602 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6NUO_116 | 1/RA/1495:1497, 1/RA/1509:1510 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6NUO_117 | 1/RA/1498:1499, 1/RA/1506:1508 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6NUO_118 | 1/RA/1516:1520, 1/RA/1566:1569 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6NUO_119 | 1/RA/1528:1529, 1/RA/1552:1558 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6NUO_120 | 1/RA/1535:1537, 1/RA/1545:1546 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6NUO_121 | 1/RA/1572:1576, 1/RA/1587:1593 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6NUO_122 | 1/RA/1698:1703, 1/RA/2026:2028 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6NUO_123 | 1/RA/1710:1712, 1/RA/2017:2019 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6NUO_124 | 1/RA/1713:1716, 1/RA/2015:2016 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6NUO_367 | 1/RA/1713:1721, 1/RA/2012:2016 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6NUO_125 | 1/RA/1716:1721, 1/RA/2012:2015 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_6NUO_126 | 1/RA/1733:1738, 1/RA/1743:1749 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6NUO_127 | 1/RA/1801:1802, 1/RA/2002:2004 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6NUO_128 | 1/RA/1829:1835, 1/RA/1844:1852 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6NUO_129 | 1/RA/1868:1871, 1/RA/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6NUO_130 | 1/RA/1872:1873, 1/RA/1920:1923 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6NUO_131 | 1/RA/1877:1880, 1/RA/1915:1916 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6NUO_132 | 1/RA/1882:1886, 1/RA/1909:1913 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6NUO_133 | 1/RA/1887:1891, 1/RA/1904:1908 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6NUO_134 | 1/RA/1955:1956, 1/RA/1986:1989 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6NUO_135 | 1/RA/1956:1967, 1/RA/1983:1986 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6NUO_136 | 1/RA/2072:2074, 1/RA/2629:2630 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6NUO_137 | 1/RA/2076:2079, 1/RA/2623:2627 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_6NUO_138 | 1/RA/2089:2091, 1/RA/2454:2455 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6NUO_139 | 1/RA/2092:2093, 1/RA/2450:2453 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_6NUO_140 | 1/RA/2103:2105, 1/RA/2248:2251 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6NUO_141 | 1/RA/2107:2109, 1/RA/2244:2246 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6NUO_142 | 1/RA/2119:2123, 1/RA/2211:2214 | No text annotation | ||
| IL_6NUO_143 | 1/RA/2123:2125, 1/RA/2209:2211 | No text annotation | ||
| IL_6NUO_144 | 1/RA/2125:2128, 1/RA/2205:2209 | No text annotation | ||
| IL_6NUO_145 | 1/RA/2128:2129, 1/RA/2203:2205 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_6NUO_146 | 1/RA/2129:2143, 1/RA/2199:2203 | No text annotation | ||
| IL_6NUO_368 | 1/RA/2129:2146, 1/RA/2196:2203 | No text annotation | ||
| IL_6NUO_147 | 1/RA/2146:2149, 1/RA/2183:2196 | No text annotation | ||
| IL_6NUO_369 | 1/RA/2146:2158, 1/RA/2177:2196 | No text annotation | ||
| IL_6NUO_148 | 1/RA/2149:2158, 1/RA/2177:2183 | No text annotation | ||
| IL_6NUO_149 | 1/RA/2309:2311, 1/RA/2329:2333 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_61476.2 | |
| IL_6NUO_150 | 1/RA/2362:2365, 1/RA/2376:2379 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6NUO_151 | 1/RA/2413:2415, 1/RA/2426:2427 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6NUO_152 | 1/RA/2465:2466, 1/RA/2510:2512 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6NUO_153 | 1/RA/2466:2467, 1/RA/2508:2510 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6NUO_154 | 1/RA/2469:2471, 1/RA/2505:2506 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_6NUO_155 | 1/RA/2471:2473, 1/RA/2501:2505 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6NUO_156 | 1/RA/2478:2482, 1/RA/2492:2496 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6NUO_157 | 1/RA/2519:2520, 1/RA/2592:2594 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_6NUO_158 | 1/RA/2522:2524, 1/RA/2586:2590 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6NUO_159 | 1/RA/2524:2525, 1/RA/2583:2586 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_6NUO_160 | 1/RA/2534:2535, 1/RA/2552:2555 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6NUO_161 | 1/RA/2603:2604, 1/RA/2613:2615 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6NUO_162 | 1/RA/2648:2652, 1/RA/2787:2795 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6NUO_163 | 1/RA/2664:2670, 1/RA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6NUO_164 | 1/RA/2692:2696, 1/RA/2738:2740 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6NUO_165 | 1/RA/2699:2703, 1/RA/2731:2735 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6NUO_166 | 1/RA/2707:2708, 1/RA/2723:2727 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6NUO_167 | 1/RA/2750:2755, 1/RA/2775:2780 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6NUO_168 | 1/RA/2848:2849, 1/RA/2888:2890 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6NUO_169 | 1/RA/2853:2856, 1/RA/2880:2884 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6NUO_170 | 1/RA/2857:2862, 1/RA/2875:2879 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6NUO_171 | 1/RB/17:18, 1/RB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.6 | |
| IL_6NUO_172 | 1/RB/23:28, 1/RB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6NUO_173 | 1/RB/30:31, 1/RB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6NUO_174 | 1/RB/33:38, 1/RB/44:49 | No text annotation | homologous IL_7A0S_105 NA | |
| IL_6NUO_175 | 1/RB/71:79, 1/RB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6NUO_176 | 1/XA/30:32, 1/XA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_6NUO_177 | 1/XA/44:45, 1/XA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6NUO_178 | 1/XA/47:52, 1/XA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_6NUO_179 | 1/XA/54:56, 1/XA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6NUO_180 | 1/XA/63:66, 1/XA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6NUO_181 | 1/XA/67:69, 1/XA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6NUO_182 | 1/XA/129A:131, 1/XA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_6NUO_183 | 1/XA/132:136, 1/XA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6NUO_184 | 1/XA/148:153, 1/XA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6NUO_185 | 1/XA/186A:186C, 1/XA/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6NUO_186 | 1/XA/242:247, 1/XA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6NUO_187 | 1/XA/249:252, 1/XA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6NUO_188 | 1/XA/292:293, 1/XA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6NUO_189 | 1/XA/367:369, 1/XA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_6NUO_190 | 1/XA/371:375, 1/XA/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_6NUO_191 | 1/XA/375:376, 1/XA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_6NUO_370 | 1/XA/409:416, 1/XA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6NUO_193 | 1/XA/446:450, 1/XA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_6NUO_194 | 1/XA/450:455, 1/XA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6NUO_195 | 1/XA/504:511, 1/XA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6NUO_196 | 1/XA/515:521, 1/XA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6NUO_197 | 1/XA/569:575, 1/XA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6NUO_198 | 1/XA/580:584, 1/XA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_6NUO_199 | 1/XA/594:596, 1/XA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6NUO_200 | 1/XA/597:598, 1/XA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6NUO_201 | 1/XA/605:612, 1/XA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6NUO_202 | 1/XA/654:655, 1/XA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_6NUO_203 | 1/XA/657:658, 1/XA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6NUO_204 | 1/XA/662:666, 1/XA/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_6NUO_371 | 1/XA/673:677, 1/XA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6NUO_206 | 1/XA/683:688, 1/XA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6NUO_207 | 1/XA/774:778, 1/XA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6NUO_208 | 1/XA/779:783, 1/XA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6NUO_209 | 1/XA/887:894, 1/XA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6NUO_210 | 1/XA/922:923, 1/XA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6NUO_211 | 1/XA/925:927, 1/XA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6NUO_212 | 1/XA/933:935, 1/XA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6NUO_213 | 1/XA/953:954, 1/XA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_6NUO_214 | 1/XA/993:997, 1/XA/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
| IL_6NUO_215 | 1/XA/1027:1028B, 1/XA/1033:1034 | No text annotation | ||
| IL_6NUO_216 | 1/XA/1048:1050, 1/XA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_6NUO_217 | 1/XA/1052:1056, 1/XA/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_6NUO_382 | 1/XA/1057:1058, 1/XA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6NUO_219 | 1/XA/1060:1061, 1/XA/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6NUO_220 | 1/XA/1061:1063, 1/XA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6NUO_221 | 1/XA/1122:1128, 1/XA/1143:1151 | No text annotation | ||
| IL_6NUO_372 | 1/XA/1123:1132, 1/XA/1142:1150 | No text annotation | ||
| IL_6NUO_222 | 1/XA/1128:1132, 1/XA/1142:1143 | Minor groove platform | geometric IL_5J7L_007 IL_15052.4 | |
| IL_6NUO_223 | 1/XA/1247:1253, 1/XA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6NUO_224 | 1/XA/1255:1258, 1/XA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6NUO_225 | 1/XA/1259:1260, 1/XA/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6NUO_226 | 1/XA/1260:1262, 1/XA/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_6NUO_227 | 1/XA/1303:1308, 1/XA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_6NUO_228 | 1/XA/1399:1401, 1/XA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6NUO_229 | 1/XA/1401:1404, 1/XA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6NUO_230 | 1/XA/1405:1407, 1/XA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_6NUO_231 | 1/XA/1407:1409, 1/XA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6NUO_232 | 1/XA/1412:1414, 1/XA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6NUO_233 | 1/XA/1416:1419, 1/XA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6NUO_234 | 1/XA/1431:1435, 1/XA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_6NUO_235 | 1/XA/1435:1437, 1/XA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_6CZR_171 NA | |
| IL_6NUO_236 | 1/XA/1440:1447, 1/XA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_6NUO_237 | 1/YA/24:30, 1/YA/535:541 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6NUO_238 | 1/YA/36:37, 1/YA/468:470 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6NUO_239 | 1/YA/42:43, 1/YA/461:463 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_6NUO_240 | 1/YA/80:84, 1/YA/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6NUO_241 | 1/YA/172:173, 1/YA/201:203 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6NUO_242 | 1/YA/177:183, 1/YA/190:197 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6NUO_243 | 1/YA/228:234, 1/YA/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6NUO_244 | 1/YA/269:270, 1/YA/273:275 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6NUO_245 | 1/YA/291:292, 1/YA/392:394 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6NUO_383 | 1/YA/297:302, 1/YA/386:387 | No text annotation | ||
| IL_6NUO_247 | 1/YA/304:308, 1/YA/381:384 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6NUO_248 | 1/YA/312:314, 1/YA/374:377 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6NUO_249 | 1/YA/317:319, 1/YA/367:371 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6NUO_250 | 1/YA/507:510, 1/YA/521:534 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6NUO_251 | 1/YA/587:589, 1/YA/598:600 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_6NUO_252 | 1/YA/629:633, 1/YA/643:647 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_6NUO_253 | 1/YA/719:721, 1/YA/853:855 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6NUO_254 | 1/YA/721:725, 1/YA/846:853 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_6NUO_255 | 1/YA/744:745, 1/YA/810:812 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_6NUO_256 | 1/YA/749:750, 1/YA/775:777 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6NUO_257 | 1/YA/750:754, 1/YA/771:775 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6NUO_258 | 1/YA/785:788, 1/YA/803:805 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6NUO_259 | 1/YA/822:824, 1/YA/834:838 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6NUO_384 | 1/YA/884:885, 1/YA/985:987 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6NUO_261 | 1/YA/891:893, 1/YA/976:979 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6NUO_373 | 1/YA/891:897, 1/YA/973:979 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6NUO_262 | 1/YA/893:897, 1/YA/973:976 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6NUO_374 | 1/YA/905:909, 1/YA/961:965 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_6NUO_264 | 1/YA/909:910, 1/YA/959:961 | Minor groove platform | geometric IL_4V9F_034 IL_51454.3 | |
| IL_6NUO_265 | 1/YA/911:915, 1/YA/955:958 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6NUO_266 | 1/YA/922:924, 1/YA/945:948 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6NUO_267 | 1/YA/924:926, 1/YA/944:945 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_6NUO_268 | 1/YA/927:930, 1/YA/939:943 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_6NUO_269 | 1/YA/997:999, 1/YA/1008:1010 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6NUO_270 | 1/YA/1040:1042, 1/YA/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6NUO_271 | 1/YA/1044:1048, 1/YA/1199:1203 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_6NUO_272 | 1/YA/1050:1057, 1/YA/1196:1197 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_6NUO_273 | 1/YA/1057:1059, 1/YA/1195:1196 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_6NUO_274 | 1/YA/1064:1070, 1/YA/1185:1190 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6NUO_275 | 1/YA/1070:1076, 1/YA/1170:1185 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6NUO_276 | 1/YA/1077:1080, 1/YA/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6NUO_376 | 1/YA/1089:1097, 1/YA/1154:1158 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6NUO_385 | 1/YA/1105:1109, 1/YA/1121:1125 | No text annotation | ||
| IL_6NUO_279 | 1/YA/1133:1137, 1/YA/1146:1148 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.2 | |
| IL_6NUO_280 | 1/YA/1241:1243, 1/YA/1293:1296 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6NUO_281 | 1/YA/1247:1251, 1/YA/1286:1289 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6NUO_282 | 1/YA/1253:1260, 1/YA/1280:1284 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6NUO_283 | 1/YA/1264:1266, 1/YA/1275:1276 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6NUO_284 | 1/YA/1308:1315, 1/YA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6NUO_285 | 1/YA/1356:1359, 1/YA/1649:1650 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6NUO_286 | 1/YA/1365:1369, 1/YA/1377:1379 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6NUO_287 | 1/YA/1397:1401, 1/YA/1422:1426 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6NUO_288 | 1/YA/1403:1407, 1/YA/1416:1420 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6NUO_289 | 1/YA/1461:1462, 1/YA/1629:1633 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6NUO_290 | 1/YA/1463:1467, 1/YA/1624:1628 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_6NUO_291 | 1/YA/1479:1481, 1/YA/1604:1607 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6NUO_292 | 1/YA/1483:1486, 1/YA/1598:1602 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6NUO_293 | 1/YA/1495:1497, 1/YA/1509:1510 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6NUO_294 | 1/YA/1498:1499, 1/YA/1506:1508 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6NUO_295 | 1/YA/1516:1520, 1/YA/1566:1569 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6NUO_296 | 1/YA/1528:1529, 1/YA/1552:1558 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6NUO_297 | 1/YA/1535:1537, 1/YA/1545:1546 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6NUO_298 | 1/YA/1572:1576, 1/YA/1587:1593 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6NUO_299 | 1/YA/1698:1703, 1/YA/2026:2028 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6NUO_300 | 1/YA/1710:1712, 1/YA/2017:2019 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_6NUO_301 | 1/YA/1713:1716, 1/YA/2015:2016 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6NUO_377 | 1/YA/1713:1721, 1/YA/2012:2016 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6NUO_302 | 1/YA/1716:1721, 1/YA/2012:2015 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_6NUO_303 | 1/YA/1733:1738, 1/YA/1743:1749 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6NUO_304 | 1/YA/1801:1802, 1/YA/2002:2004 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6NUO_305 | 1/YA/1829:1835, 1/YA/1844:1852 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6NUO_306 | 1/YA/1868:1871, 1/YA/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6NUO_307 | 1/YA/1872:1873, 1/YA/1920:1923 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6NUO_308 | 1/YA/1877:1880, 1/YA/1915:1916 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6NUO_309 | 1/YA/1882:1886, 1/YA/1909:1913 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6NUO_310 | 1/YA/1887:1891, 1/YA/1904:1908 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6NUO_311 | 1/YA/1955:1956, 1/YA/1986:1989 | Bulged stacked bases | geometric IL_7A0S_071 IL_22551.4 | |
| IL_6NUO_312 | 1/YA/1956:1967, 1/YA/1983:1986 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6NUO_313 | 1/YA/2072:2074, 1/YA/2629:2630 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6NUO_314 | 1/YA/2076:2079, 1/YA/2623:2627 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_6NUO_315 | 1/YA/2089:2091, 1/YA/2454:2455 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6NUO_316 | 1/YA/2092:2093, 1/YA/2450:2453 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6NUO_317 | 1/YA/2103:2105, 1/YA/2248:2251 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6NUO_318 | 1/YA/2107:2109, 1/YA/2244:2246 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6NUO_319 | 1/YA/2121:2125, 1/YA/2209:2212 | No text annotation | ||
| IL_6NUO_378 | 1/YA/2121:2129, 1/YA/2203:2212 | No text annotation | ||
| IL_6NUO_320 | 1/YA/2125:2128, 1/YA/2205:2209 | No text annotation | ||
| IL_6NUO_321 | 1/YA/2128:2129, 1/YA/2203:2205 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6NUO_322 | 1/YA/2129:2145, 1/YA/2197:2203 | No text annotation | ||
| IL_6NUO_379 | 1/YA/2129:2146, 1/YA/2196:2203 | No text annotation | ||
| IL_6NUO_323 | 1/YA/2146:2151, 1/YA/2182:2196 | No text annotation | ||
| IL_6NUO_386 | 1/YA/2151:2158, 1/YA/2177:2182 | No text annotation | ||
| IL_6NUO_325 | 1/YA/2309:2311, 1/YA/2329:2333 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_6NUO_326 | 1/YA/2362:2365, 1/YA/2376:2379 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6NUO_327 | 1/YA/2413:2415, 1/YA/2426:2427 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6NUO_328 | 1/YA/2465:2466, 1/YA/2510:2512 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_6NUO_329 | 1/YA/2466:2467, 1/YA/2508:2510 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_6NUO_330 | 1/YA/2469:2471, 1/YA/2505:2506 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_6NUO_331 | 1/YA/2471:2473, 1/YA/2501:2505 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6NUO_332 | 1/YA/2478:2482, 1/YA/2492:2496 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6NUO_333 | 1/YA/2519:2520, 1/YA/2592:2594 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_6NUO_334 | 1/YA/2522:2524, 1/YA/2586:2590 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6NUO_335 | 1/YA/2524:2525, 1/YA/2583:2586 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_6NUO_336 | 1/YA/2534:2535, 1/YA/2552:2555 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6NUO_337 | 1/YA/2603:2604, 1/YA/2613:2615 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6NUO_338 | 1/YA/2648:2652, 1/YA/2787:2795 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6NUO_339 | 1/YA/2664:2670, 1/YA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6NUO_340 | 1/YA/2692:2696, 1/YA/2738:2740 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6NUO_341 | 1/YA/2699:2703, 1/YA/2731:2735 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6NUO_342 | 1/YA/2707:2708, 1/YA/2723:2727 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6NUO_343 | 1/YA/2750:2755, 1/YA/2775:2780 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6NUO_344 | 1/YA/2848:2849, 1/YA/2888:2890 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6NUO_345 | 1/YA/2853:2856, 1/YA/2880:2884 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6NUO_346 | 1/YA/2857:2862, 1/YA/2875:2879 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6NUO_347 | 1/YB/6:11, 1/YB/110:115 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6NUO_348 | 1/YB/17:18, 1/YB/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_6NUO_349 | 1/YB/23:28, 1/YB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6NUO_350 | 1/YB/30:31, 1/YB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6NUO_351 | 1/YB/34:38, 1/YB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6NUO_352 | 1/YB/69:71, 1/YB/106:108 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_6NUO_353 | 1/YB/71:79, 1/YB/98:106 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_56455.6 | |
| IL_6NUO_354 | 1/YB/80:82, 1/YB/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_6NUO_355 | 1/YB/83:86, 1/YB/91:94 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_51479.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6NUO_356 | No text annotation | ||
| IL_6NUO_030 | No text annotation | ||
| IL_6NUO_358 | No text annotation | ||
| IL_6NUO_045 | No text annotation | ||
| IL_6NUO_067 | Isolated non-canonical cWW pair | ||
| IL_6NUO_069 | No text annotation | ||
| IL_6NUO_086 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6NUO_363 | No text annotation | ||
| IL_6NUO_364 | No text annotation | ||
| IL_6NUO_365 | No text annotation | ||
| IL_6NUO_101 | No text annotation | ||
| IL_6NUO_366 | No text annotation | ||
| IL_6NUO_192 | No text annotation | ||
| IL_6NUO_205 | No text annotation | ||
| IL_6NUO_218 | No text annotation | ||
| IL_6NUO_246 | No text annotation | ||
| IL_6NUO_260 | No text annotation | ||
| IL_6NUO_263 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6NUO_375 | No text annotation | ||
| IL_6NUO_277 | No text annotation | ||
| IL_6NUO_278 | No text annotation | ||
| IL_6NUO_324 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6NUO_001 | 1/QA/46:47, 1/QA/361:367, 1/QA/393:395 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_6NUO_054 | 1/QA/46:52, 1/QA/359:367, 1/QA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6NUO_002 | 1/QA/586:588, 1/QA/651:654, 1/QA/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_6NUO_055 | 1/QA/586:588, 1/QA/651:655, 1/QA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6NUO_003 | 1/QA/672:673, 1/QA/717:725, 1/QA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6NUO_004 | 1/QA/826:829, 1/QA/857:861, 1/QA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6NUO_056 | 1/QA/936:939, 1/QA/1344:1350, 1/QA/1372:1379 | No text annotation | ||
| J3_6NUO_005 | 1/QA/943:946, 1/QA/1235:1237, 1/QA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_6NUO_006 | 1/QA/955:962, 1/QA/973:984, 1/QA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6NUO_007 | 1/QA/990:997, 1/QA/1044:1047, 1/QA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6NUO_008 | 1/QA/1063:1068, 1/QA/1107:1113, 1/QA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6NUO_057 | 1/QA/1073:1074, 1/QA/1083:1086, 1/QA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6NUO_010 | 1/QA/1116:1119, 1/QA/1154:1161, 1/QA/1175:1184 | No text annotation | ||
| J3_6NUO_011 | 1/QA/1237:1241, 1/QA/1296:1303, 1/QA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6NUO_012 | 1/RA/30:31, 1/RA/500:507, 1/RA/534:535 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6NUO_059 | 1/RA/30:31, 1/RA/500:510, 1/RA/521:535 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6NUO_060 | 1/RA/32:35, 1/RA/471:487, 1/RA/494:499 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6NUO_013 | 1/RA/55:56, 1/RA/69:75, 1/RA/108:112 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6NUO_014 | 1/RA/287:289, 1/RA/396:402, 1/RA/426:431 | No text annotation | ||
| J3_6NUO_061 | 1/RA/321:325, 1/RA/340:349, 1/RA/361:365 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_6NUO_015 | 1/RA/730:736, 1/RA/820:822, 1/RA/838:841 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6NUO_016 | 1/RA/745:747, 1/RA/779:783, 1/RA/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6NUO_017 | 1/RA/1101:1103, 1/RA/1127:1133, 1/RA/1148:1150 | No text annotation | ||
| J3_6NUO_018 | 1/RA/1344:1349, 1/RA/1671:1673, 1/RA/1686:1689 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6NUO_019 | 1/RA/1352:1355, 1/RA/1651:1657, 1/RA/1666:1668 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6NUO_020 | 1/RA/1390:1396, 1/RA/1427:1431, 1/RA/1448:1449 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6NUO_062 | 1/RA/1470:1475, 1/RA/1611:1612, 1/RA/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6NUO_021 | 1/RA/2113:2115, 1/RA/2218:2222, 1/RA/2235:2240 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6NUO_063 | 1/RA/2294:2296, 1/RA/2396:2407, 1/RA/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6NUO_022 | 1/RA/2307:2309, 1/RA/2333:2335, 1/RA/2344:2349 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6NUO_023 | 1/RA/2529:2532, 1/RA/2557:2559, 1/RA/2573:2579 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6NUO_024 | 1/RA/2802:2805, 1/RA/2815:2821, 1/RA/2899:2903 | No text annotation | ||
| J3_6NUO_025 | 1/RA/2824:2825, 1/RA/2841:2846, 1/RA/2892:2896 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6NUO_075 | 1/RB/11:16, 1/RB/68:69, 1/RB/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_6NUO_027 | 1/XA/46:47, 1/XA/361:367, 1/XA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6NUO_065 | 1/XA/46:52, 1/XA/359:367, 1/XA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6NUO_028 | 1/XA/586:588, 1/XA/651:654, 1/XA/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_6NUO_066 | 1/XA/586:588, 1/XA/651:655, 1/XA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6NUO_029 | 1/XA/672:673, 1/XA/717:725, 1/XA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6NUO_030 | 1/XA/826:829, 1/XA/857:861, 1/XA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6NUO_067 | 1/XA/936:939, 1/XA/1344:1350, 1/XA/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_6NUO_031 | 1/XA/943:946, 1/XA/1235:1237, 1/XA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6NUO_032 | 1/XA/955:962, 1/XA/973:984, 1/XA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6NUO_033 | 1/XA/990:993, 1/XA/1045:1047, 1/XA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6NUO_068 | 1/XA/990:997, 1/XA/1044:1047, 1/XA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6NUO_034 | 1/XA/1003:1006, 1/XA/1023:1027, 1/XA/1034:1037 | No text annotation | ||
| J3_6NUO_035 | 1/XA/1063:1068, 1/XA/1107:1113, 1/XA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6NUO_036 | 1/XA/1073:1074, 1/XA/1083:1087, 1/XA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_6NUO_037 | 1/XA/1116:1118, 1/XA/1155:1161, 1/XA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6NUO_038 | 1/XA/1237:1241, 1/XA/1296:1303, 1/XA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6NUO_039 | 1/YA/30:31, 1/YA/500:507, 1/YA/534:535 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6NUO_069 | 1/YA/30:31, 1/YA/500:510, 1/YA/521:535 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6NUO_070 | 1/YA/32:35, 1/YA/471:487, 1/YA/494:499 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6NUO_040 | 1/YA/55:56, 1/YA/69:75, 1/YA/108:112 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6NUO_041 | 1/YA/258:262, 1/YA/282:289, 1/YA/396:397 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6NUO_071 | 1/YA/321:325, 1/YA/340:349, 1/YA/361:365 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_6NUO_042 | 1/YA/730:736, 1/YA/820:822, 1/YA/838:841 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_6NUO_043 | 1/YA/745:747, 1/YA/779:783, 1/YA/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6NUO_044 | 1/YA/1101:1104, 1/YA/1126:1133, 1/YA/1148:1150 | No text annotation | ||
| J3_6NUO_045 | 1/YA/1344:1349, 1/YA/1671:1673, 1/YA/1686:1689 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6NUO_046 | 1/YA/1352:1355, 1/YA/1651:1657, 1/YA/1666:1668 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6NUO_047 | 1/YA/1390:1396, 1/YA/1427:1431, 1/YA/1448:1449 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6NUO_072 | 1/YA/1470:1475, 1/YA/1611:1612, 1/YA/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6NUO_048 | 1/YA/2113:2115, 1/YA/2218:2222, 1/YA/2235:2240 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6NUO_073 | 1/YA/2294:2296, 1/YA/2396:2407, 1/YA/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6NUO_049 | 1/YA/2307:2309, 1/YA/2333:2335, 1/YA/2344:2349 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6NUO_050 | 1/YA/2529:2532, 1/YA/2557:2559, 1/YA/2573:2579 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6NUO_051 | 1/YA/2802:2805, 1/YA/2815:2821, 1/YA/2899:2903 | No text annotation | ||
| J3_6NUO_052 | 1/YA/2824:2825, 1/YA/2841:2846, 1/YA/2892:2896 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_6NUO_053 | 1/YB/11:16, 1/YB/68:69, 1/YB/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6NUO_074 | 1/YB/11:16, 1/YB/68:71, 1/YB/106:110 | No text annotation | ||
| J4_6NUO_001 | 1/QA/115:122, 1/QA/239:240, 1/QA/286:289, 1/QA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6NUO_002 | 1/QA/142:144, 1/QA/178:183, 1/QA/194:198, 1/QA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6NUO_003 | 1/QA/575:577, 1/QA/764:769, 1/QA/810:821, 1/QA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6NUO_029 | 1/QV/7:10, 1/QV/25:27, 1/QV/43:49, 1/QV/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_6NUO_005 | 1/RA/257:262, 1/RA/282:287, 1/RA/431:433, 1/RA/448:451 | No text annotation | ||
| J4_6NUO_006 | 1/RA/321:325, 1/RA/340:343, 1/RA/347:349, 1/RA/361:365 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6NUO_007 | 1/RA/1316:1322, 1/RA/1340:1341, 1/RA/1692:1695, 1/RA/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6NUO_008 | 1/RA/1356:1360, 1/RA/1384:1389, 1/RA/1450:1451, 1/RA/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6NUO_009 | 1/RA/1359:1360, 1/RA/1384:1389, 1/RA/1450:1451, 1/RA/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6NUO_010 | 1/RA/1490:1492, 1/RA/1513:1514, 1/RA/1571:1572, 1/RA/1593:1594 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6NUO_011 | 1/RA/1803:1807, 1/RA/1819:1823, 1/RA/1858:1861, 1/RA/1997:2001 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6NUO_012 | 1/RA/1864:1866, 1/RA/1927:1928, 1/RA/1946:1955, 1/RA/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6NUO_013 | 1/RA/2297:2301, 1/RA/2355:2359, 1/RA/2382:2384, 1/RA/2393:2395 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6NUO_014 | 1/RA/2655:2658, 1/RA/2686:2688, 1/RA/2744:2748, 1/RA/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6NUO_015 | 1/XA/115:122, 1/XA/239:240, 1/XA/286:289, 1/XA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6NUO_016 | 1/XA/142:144, 1/XA/178:183, 1/XA/194:198, 1/XA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6NUO_017 | 1/XA/575:577, 1/XA/764:769, 1/XA/810:821, 1/XA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6NUO_018 | 1/XV/7:10, 1/XV/25:27, 1/XV/43:49, 1/XV/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_6NUO_019 | 1/YA/257:258, 1/YA/397:402, 1/YA/426:433, 1/YA/448:451 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6NUO_020 | 1/YA/321:325, 1/YA/340:343, 1/YA/347:349, 1/YA/361:365 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6NUO_021 | 1/YA/1316:1322, 1/YA/1340:1341, 1/YA/1692:1695, 1/YA/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6NUO_022 | 1/YA/1356:1360, 1/YA/1384:1389, 1/YA/1450:1451, 1/YA/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6NUO_023 | 1/YA/1359:1360, 1/YA/1384:1389, 1/YA/1450:1451, 1/YA/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6NUO_024 | 1/YA/1490:1492, 1/YA/1513:1514, 1/YA/1571:1572, 1/YA/1593:1594 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6NUO_025 | 1/YA/1803:1807, 1/YA/1819:1823, 1/YA/1858:1861, 1/YA/1997:2001 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6NUO_026 | 1/YA/1864:1866, 1/YA/1927:1928, 1/YA/1946:1955, 1/YA/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6NUO_027 | 1/YA/2297:2301, 1/YA/2355:2359, 1/YA/2382:2384, 1/YA/2393:2395 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_6NUO_028 | 1/YA/2655:2658, 1/YA/2686:2688, 1/YA/2744:2748, 1/YA/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_6NUO_001 | 1/QA/36:39, 1/QA/403:406, 1/QA/436:442, 1/QA/492:500, 1/QA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6NUO_002 | 1/QA/58:61, 1/QA/106:113, 1/QA/314:316, 1/QA/337:339, 1/QA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6NUO_003 | 1/RA/46:53, 1/RA/114:119, 1/RA/128:129, 1/RA/148:150, 1/RA/165:167 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6NUO_004 | 1/RA/556:558, 1/RA/583:587, 1/RA/600:602, 1/RA/1307:1308, 1/RA/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6NUO_005 | 1/RA/607:612, 1/RA/715:718, 1/RA/856:859, 1/RA/1240:1241, 1/RA/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6NUO_006 | 1/RA/1721:1729, 1/RA/1753:1754, 1/RA/1782:1783, 1/RA/1787:1795, 1/RA/2010:2012 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6NUO_019 | 1/RA/2079:2086, 1/RA/2458:2465, 1/RA/2512:2518, 1/RA/2595:2600, 1/RA/2618:2623 | No text annotation | ||
| J5_6NUO_008 | 1/RA/2096:2099, 1/RA/2255:2258, 1/RA/2270:2271, 1/RA/2293:2294, 1/RA/2439:2447 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6NUO_009 | 1/XA/36:39, 1/XA/403:406, 1/XA/436:442, 1/XA/492:500, 1/XA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6NUO_010 | 1/XA/58:61, 1/XA/106:113, 1/XA/314:316, 1/XA/337:339, 1/XA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6NUO_011 | 1/YA/46:53, 1/YA/114:119, 1/YA/128:129, 1/YA/148:150, 1/YA/165:167 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6NUO_012 | 1/YA/257:262, 1/YA/282:289, 1/YA/396:402, 1/YA/426:433, 1/YA/448:451 | No text annotation | ||
| J5_6NUO_013 | 1/YA/556:558, 1/YA/583:587, 1/YA/600:602, 1/YA/1307:1308, 1/YA/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6NUO_014 | 1/YA/607:612, 1/YA/715:718, 1/YA/856:859, 1/YA/1240:1241, 1/YA/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6NUO_015 | 1/YA/624:627, 1/YA/649:653, 1/YA/660:663, 1/YA/675:680, 1/YA/699:703 | No text annotation | ||
| J5_6NUO_016 | 1/YA/1721:1729, 1/YA/1753:1754, 1/YA/1782:1783, 1/YA/1787:1795, 1/YA/2010:2012 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6NUO_017 | 1/YA/2079:2086, 1/YA/2458:2465, 1/YA/2512:2518, 1/YA/2595:2600, 1/YA/2618:2623 | No text annotation | ||
| J5_6NUO_018 | 1/YA/2096:2099, 1/YA/2255:2258, 1/YA/2270:2271, 1/YA/2293:2294, 1/YA/2439:2447 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_6NUO_001 | 1/RA/44:45, 1/RA/168:172, 1/RA/203:213, 1/RA/220:224, 1/RA/251:255, 1/RA/453:460 | No text annotation | ||
| J6_6NUO_002 | 1/RA/2096:2099, 1/RA/2255:2258, 1/RA/2270:2271, 1/RA/2293:2296, 1/RA/2396:2407, 1/RA/2433:2447 | No text annotation | ||
| J6_6NUO_003 | 1/YA/44:45, 1/YA/168:172, 1/YA/203:213, 1/YA/220:224, 1/YA/251:255, 1/YA/453:460 | No text annotation | ||
| J6_6NUO_004 | 1/YA/2096:2099, 1/YA/2255:2258, 1/YA/2270:2271, 1/YA/2293:2296, 1/YA/2396:2407, 1/YA/2433:2447 | No text annotation | ||
| J7_6NUO_001 | 1/RA/8:15, 1/RA/550:556, 1/RA/2040:2045, 1/RA/2062:2065, 1/RA/2637:2642, 1/RA/2801:2802, 1/RA/2903:2904 | No text annotation | ||
| J7_6NUO_002 | 1/RA/864:869, 1/RA/882:883, 1/RA/988:991, 1/RA/1016:1022, 1/RA/1033:1037, 1/RA/1209:1210, 1/RA/1230:1235 | No text annotation | ||
| J7_6NUO_003 | 1/YA/8:15, 1/YA/550:556, 1/YA/2040:2045, 1/YA/2062:2065, 1/YA/2637:2642, 1/YA/2801:2802, 1/YA/2903:2904 | No text annotation | ||
| J7_6NUO_004 | 1/YA/864:869, 1/YA/882:883, 1/YA/988:991, 1/YA/1016:1022, 1/YA/1033:1037, 1/YA/1209:1210, 1/YA/1230:1235 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6NUO_009 | No text annotation | ||
| J3_6NUO_058 | No text annotation | ||
| J3_6NUO_064 | No text annotation | ||
| J3_6NUO_026 | No text annotation | ||
| J4_6NUO_004 | No text annotation | ||
| J5_6NUO_007 | No text annotation |
Coloring options: