HL_6NUO_072

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6NUO|1|RA|C|1539, 6NUO|1|RA|U|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NUO_072 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1634

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6NUO|1|RA|G|1538
6NUO|1|RA|C|1539
6NUO|1|RA|A|1540
6NUO|1|RA|A|1541
6NUO|1|RA|A|1542
6NUO|1|RA|U|1543
6NUO|1|RA|C|1544

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2