HL_6NUO_153

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6NUO|1|YA|G|353, 6NUO|1|YA|A|354, 6NUO|1|YA|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NUO_153 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.086

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6NUO|1|YA|G|351
6NUO|1|YA|U|352
6NUO|1|YA|G|353
6NUO|1|YA|A|354
6NUO|1|YA|A|355
6NUO|1|YA|A|356
6NUO|1|YA|G|357
6NUO|1|YA|C|358
6NUO|1|YA|C|359

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24