HL_6NWY_036

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCGAUAA

Length

8 nucleotides

Bulged bases

6NWY|1|RA|A|71, 6NWY|1|RA|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_036 not in the Motif Atlas

Geometric match to HL_1ET4_001

Geometric discrepancy: 0.2387

The information below is about HL_1ET4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.4

Basepair signature

cWW-cWW-cSH-F

Number of instances in this motif group

5

Unit IDs

6NWY|1|RA|U|67
6NWY|1|RA|G|68
6NWY|1|RA|C|69
6NWY|1|RA|G|70
6NWY|1|RA|A|71
6NWY|1|RA|U|72
6NWY|1|RA|A|73
6NWY|1|RA|A|74

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L29

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23