Motif HL_86769.4 Version HL_86769.4 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_001 | 4WF9 | 0.3429 | 1 | X | LSU rRNA | G | 67 | A | 68 | C | 69 | G | 70 | A | 71 | A | 73 | U | 74 | ncWW | cSH | |
| 2 | HL_1ET4_001 | 1ET4 | 0.2083 | 1 | A | RNA APTAMER, 35-MER | C | 219 | A | 220 | C | 221 | C | 222 | U | 223 | A | 225 | G | 226 | cWW | ||
| 3 | HL_4P5J_004 | 4P5J | 0.0000 | 1 | A | tRNA-like 3' UTR element | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH |
| 4 | HL_6MJ0_010 | 6MJ0 | 0.1604 | 1 | B | tRNA-like 3' UTR element | A | 89 | G | 90 | G | 91 | G | 92 | U | 93 | A | 95 | U | 96 | cWW | cSH | |
| 5 | HL_3AMU_002 | 3AMU | 0.8138 | 4 | B | tRNA | G | 30 | G | 31 | C | 32 | U | 33 | U | 36 | A | 37 | C | 40 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGUCAU | 2 |
| GACGAUAU | 1 |
| CACCUCAG | 1 |
| GGCUCAUAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGUCA | 2 |
| ACGAUA | 1 |
| ACCUCA | 1 |
| GCUCAUAAC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cSH-F
- Heat map statistics
- Min 0.16 | Avg 0.40 | Max 0.85
Coloring options: