HL_6NWY_042

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6NWY|1|RA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_042 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.3417

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6NWY|1|RA|A|225
6NWY|1|RA|G|226
6NWY|1|RA|A|227
6NWY|1|RA|A|228
6NWY|1|RA|A|229
6NWY|1|RA|U|230

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15