HL_6NWY_228

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

6NWY|1|YA|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_228 not in the Motif Atlas

Homologous match to HL_9DFE_041

Geometric discrepancy: 0.445

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6NWY|1|YA|U|1727
6NWY|1|YA|G|1728
6NWY|1|YA|A|1729
6NWY|1|YA|U|1730
6NWY|1|YA|G|1731
6NWY|1|YA|A|1732
6NWY|1|YA|G|1733

Current chains

Chain YA

23S rRNA

Nearby chains