HL_6NY6_033

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NY6_033 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2487

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6NY6|1|A|G|157
6NY6|1|A|G|158
6NY6|1|A|G|159
6NY6|1|A|A|160
6NY6|1|A|A|161
6NY6|1|A|A|162
6NY6|1|A|C|163
6NY6|1|A|U|164

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20