HL_6O3M_065

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_065 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.4815

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6O3M|1|RA|G|1091
6O3M|1|RA|C|1092
6O3M|1|RA|G|1093
6O3M|1|RA|U|1094
6O3M|1|RA|A|1095
6O3M|1|RA|A|1096
6O3M|1|RA|U|1097
6O3M|1|RA|A|1098
6O3M|1|RA|G|1099
6O3M|1|RA|C|1100

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6