HL_6O3M_141

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GUUCGGGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_141 not in the Motif Atlas

Homologous match to HL_4V9Q_214

Geometric discrepancy: 0.1318

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6O3M|1|XV|G|32
6O3M|1|XV|U|33
6O3M|1|XV|U|34
6O3M|1|XV|C|35
6O3M|1|XV|G|36
6O3M|1|XV|G|37
6O3M|1|XV|G|38
6O3M|1|XV|A|39
6O3M|1|XV|C|40

Current chains

Chain XV

P-site ASLPro

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XI

30S ribosomal protein S9

Chain XX

mRNA